miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190558369|gb|FG941882.1|FG941882 TTTTTTTTCTTTTTTTATTGAGTTAACCTAATTAGATTAGAAAGGACAATACATGATGATAATAGTAATAATATAATGGA
TAAGATTTTTCAATTTGGTAAATCATGAATACTATATAGCATCGTGAGCAATCAGCCTTTTTTCATTATCACAGATTGAC
TGCTAACGATGTTATATCATCCACAATGAAATTTCTTCCATGTTGTTGCCATGTTTATGTGTTAAAATCCACTTCCATAT
GCTGGTGCCCAGTAATCAGCTCCATTTTCATTTCCAACATGTTGGGTACAAGACACAGGAACCAAGCACAACCCTCTACT
CCTCAAGTCCTTTGCCTTATCTTTTCCATCCTGGTTTGGAGCTCCCTTTCTTTTCAGGCCATTGTCATTCAACAGCTGAC
CGGGGTCCTCAGGAAATACAGAATTTCTTTCTCCATGTACAGACTGTGGATTCCTCATGTTTTTTGATCCATTGCCCAAG
TAAGGAGAACTCAGTGCCTCAATTTGACCCTGAAGGAATCTTATGTATCCAATGGCTTCTAACAAGACAGAAGCTGTGTC
AGTCTTTCCGAATGGGGAAACTAGCTGGTGAAGAGCTGTTATTCTATCTCCTAGCTTCTCCTTTCTCACCTTGAGAGGTG
GTTGGCTTGAAGATGGTTGACTCTTAGTCTTCTTGTAAACTCCAGCAGTTGCTGTG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V,
           chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1
          Length = 160

 Score =  106 bits (264), Expect(2) = 6e-28
 Identities = 59/79 (74%), Positives = 59/79 (74%)
 Frame = +2

Query: 38  MATSASALLSPTTFSTAISHKNPNSISFHXXXXXXXXXXXXXXXXXXTTGRKSSSGVVRG 217
           MATSASALLSPTTFSTAISHKNPNSISFH                  TTGRKSSS VVR 
Sbjct: 1   MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 60

Query: 218 ELSPSIVISLSTGLSLFLG 274
           ELSPSIVISLSTGLSLFLG
Sbjct: 61  ELSPSIVISLSTGLSLFLG 79



 Score = 37.4 bits (85), Expect(2) = 6e-28
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = +3

Query: 309 SKTGLTGAERKNHFEAGDDRAKEYV 383
           +K GL     K HFEAGDDRAKEYV
Sbjct: 92  AKQGLPEQNGKTHFEAGDDRAKEYV 116


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  191 bits (485), Expect = 4e-48
 Identities = 100/146 (68%), Positives = 114/146 (78%), Gaps = 7/146 (4%)
 Frame = -2

Query: 635 LKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLG-NGSKN 459
           LKVRKEKLG RI ALHQLVSPFGKTDTASVL EAIGYIRFLQ QIEALS PY G   S N
Sbjct: 262 LKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGN 321

Query: 458 MRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGA-----PNQDGKDK-AKDLRSRGLCLVP 297
           MR+ Q + G+R+ +FPEDPGQL+ND  +KR+GA      NQ+  ++  KDLRSRGLCLVP
Sbjct: 322 MRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVP 381

Query: 296 VSCTQHVGNENGADYWAPAYGSGF*H 219
           +SCT  VG++NGADYWAPA GS   H
Sbjct: 382 ISCTLQVGSDNGADYWAPALGSAGFH 407